PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_20EC9096A.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 265aa    MW: 29139.5 Da    PI: 8.2283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_20EC9096A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEd +l+d+++  G+g +W + + + g++R++k+c++rw++yl
  Traes_7DL_20EC9096A.2 14 KGPWSPEEDRKLKDYIHTNGTGgNWIALPTKAGLKRCGKSCRLRWLNYL 62
                           79*********************************************97 PP

2Myb_DNA-binding37.65.1e-1269111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g ++ eEd  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Traes_7DL_20EC9096A.2  69 GDFSDEEDRVICALFAAIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                            679******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.512962IPR017930Myb domain
SuperFamilySSF466891.76E-2512109IPR009057Homeodomain-like
SMARTSM007172.6E-111364IPR001005SANT/Myb domain
PfamPF002499.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001676.34E-91662No hitNo description
PROSITE profilePS5129422.26263117IPR017930Myb domain
SMARTSM007173.1E-1167115IPR001005SANT/Myb domain
PfamPF002492.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2270116IPR009057Homeodomain-like
CDDcd001677.24E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRAPCCDKG SVKKGPWSPE EDRKLKDYIH TNGTGGNWIA LPTKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRVIC ALFAAIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKKQLHL  120
LIAAAAHGQQ YGSRPPAPPF TLEQQHHHHT SSTSIASLGQ LLMFGGRGGD QQQQQQYTSS  180
FSSVDISNNT SAAAVGLQES FMFGGLQFQQ QEEETNNLLS PPAASSSGND IMTYEHHEMI  240
SPSGFFFYGD GAGAAATQEG TRFLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239462.17e-84PREDICTED: transcription factor RAX2-like
TrEMBLW5HY070.0W5HY07_WHEAT; Uncharacterized protein
STRINGMLOC_44167.11e-161(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-73myb domain protein 36
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]